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Import and Export Sequence Data

드래그 앤 드롭으로 간단히 불러오고, 내보내며, 변환하세요.

Wide ranging file format compatibility from FASTA to VectorNTI

Wide ranging file format compatibility from FASTA to VectorNTI

FASTA부터 VectorNTI까지 폭넓은 파일 형식 호환을 지원하며, Illumina, PacBio, Nanopore, Ion Torrent 등 어떤 시퀀싱 장비에서 생성된 파일이든 간단한 드래그 앤 드롭으로 Geneious Prime에 쉽게 불러올 수 있습니다.

또한, Smart NGS file importing 기능을 통해 서로 다른 샘플과 참조 서열이 섞여 있어도 SAM, BAM, GFF, BED, VCF 파일들을 한 번에 손쉽게 불러올 수 있습니다.

Import metadata onto sequences and other documents

Import metadata onto sequences and other documents

CSV 또는 TSV 형식의 스프레드시트에서 정보를 불러와, 이미 Geneious Prime에 있는 서열이나 문서에 새로운 정보를 손쉽게 덧붙이거나 업데이트할 수 있습니다. 이를 통해 후속 분석 결과나 외부 애플리케이션에서 생성된 데이터를 유연하게 통합할 수 있습니다.

Organize, search and share sequence databases

Organize, search and share sequence databases

원하는 방식으로 데이터 라이브러리를 정리하고 탐색하세요.

  • 서열 데이터베이스 추가 및 삭제
  • 문서 기록 자동 저장
  • 일괄 내보내기 및 일괄 이름 변경
  • 필드 기준 문서 필터링
  • GenBank 제출용 내보내기 지원
  • Geneious Cloud를 통한 파일 및 폴더 공유

Supported Format Types

Supported Format Types
Format Extensions Data Types Common Sources
BED *.bed Annotations UCSC
Common Assembly Format *.caf Contigs Sequencher
Clone Manager *.cm5 Nucleotide sequences Clone Manager
Clustal *.aln Alignments ClustalX
CS FASTA *.csfasta Color space FASTA ABI SOLiD
DNAStar *.seq, *.pro, *.sbd Nucleotide & protein sequences DNAStar
DNA Strider *.str Sequences DNA Strider
Embl/UniProt *.embl, *.swp Sequences Embl, UniProt
Endnote (8.0) XML *.xml Journal article references Endnote, Journal article websites
Excel spreadsheet *.xlsx, *.xls Spreadsheet files Microsoft Excel
FASTA *.fasta, *.fas, etc. Sequences, alignments PAUP*, ClustalX, BLAST, FASTA
FASTQ *.fastq, *.fasq Sequences with quality Solexa/Illumina
GCG *.seq Sequences GCG
GenBank *.gb, *.xml Nucleotide & protein sequences GenBank
Geneious *.xml, *.geneious Preferences, databases Geneious
GFF *.gff Annotations Sanger Artemis
MEGA *.meg Alignments MEGA
Molecular structure *.pdb, *.mol, *.xyz, *.cml, *.gpr, *.hin, *.nwo 3D molecular structures 3D structure databases and programs
Newick *.tre, *.tree, etc. Phylogenetic trees PHYLIP, Tree-Puzzle, PAUP*, ClustalX
Nexus *.nxs, *.nex Trees, Alignments PAUP*, Mesquite, MrBayes & MacClade
PDB *.pdb 3D Protein structures SP3, SP2, SPARKS, Protein Data Bank
PDF *.pdf Documents, presentations Adobe Writer, LaTeX, Miktex
Phrap ACE *.ace Contig assemblies Phrap/Consed
PileUp *.msf Alignments pileup (gcg)
PIR/NBRF *.pir Sequences, alignments NBRF PIR
Qual *.qual Quality file Associated with a FASTA file
Raw sequence text *.seq Sequences Any file that contains only a sequence
Rich Sequence Format *.rsf Sequences, alignments GCGs NetFetch
Comma/Tab Separated Values *.csv, *.tsv Spreadsheet files Microsoft Excel
SAM/BAM *.sam, *.bam Contigs SAMtools
Sequence Chromatograms *.ab1, *.scf Raw sequencing trace & sequence Sequencing machines
SnapGene *.dna, *.prot Sequences, annotations, metadata SnapGene
Variant Call Format *.vcf Variant calls/SNPs Variant callers and databases
Vector NTI sequence *.gb, *.gp Nucleotide & protein sequences Vector NTI
Vector NTI/AlignX alignment *.apr Alignments Vector NTI, AlignX
Vector NTI Archive *.ma4, *.pa4, *.oa4, *.ea4, *.ca6 Nucleotide & protein sequences, enzyme sets and publications Vector NTI
Vector NTI/ContigExpress *.cep Nucleotide sequence assemblies Vector NTI
Vector NTI database VNTI Database Nucleotide & protein sequences, enzyme sets and publications Vector NTI

Export Format Options

Any set of documents may be exported in Geneious native format.

Export Format Options
Data Type Format
DNA sequence FASTA, Genbank XML, Genbank flat, Geneious
Amino acid sequence FASTA, Genbank XML, Genbank flat, Geneious
Chromatogram sequence ABI, Geneious
Sequence with quality FastQ, Qual, Geneious
Annotation GFF, BED, VCF, Geneious
Multiple sequence alignment Phylip, FASTA, NEXUS, MEGA3, Geneious
Assembly Phrap ACE, Geneious, SAM/BAM, Geneious
Phylogenetic tree Phylip, FASTA, NEXUS, Newick, MEGA3, Geneious
PDF document PDF, Geneious
Publication EndNote 8.0, Geneious
Graphs CSV or WIG, or images